May be this is a stupid question but why $$\int \sqrt{(\sin x)^2} \,\mathrm{d}x = \int |\sin x| \,\mathrm{d}x$$ instead of $$\pm \int \sin x \,\mathrm{d}x$$
I think may be because it violates the rule that a function can't have more than 1 output for a single input, which brings me to my next question does the intgrand need to be a function?
Answer
The definition of the square root, $\sqrt{\,\cdot\,}$, in real numbers is a function that given a non-negative number $y$, we take the non-negative number $x$ such that $x^2 = y$. That's why we write $$x^2 = k \Rightarrow x = \pm\sqrt{k}$$ instead of $$x^2 = k \Rightarrow x = \sqrt{k}.$$
We have to put the $\pm$ sign because the square root itself only considers the positive answer.
Observation: If the answer of square root was the two numbers, then it couldn't be a function.
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